Index

A

add_dataset() (flatiron_tk.io.io.PVDWriter method) add_edge_stab() (flatiron_tk.physics.steady_scalar_transport.SteadyScalarTransport method) add_stab() (flatiron_tk.physics.steady_navier_stokes.SteadyNavierStokes method) (flatiron_tk.physics.steady_scalar_transport.SteadyScalarTransport method) (flatiron_tk.physics.steady_stokes.SteadyStokes method) (flatiron_tk.physics.transient_brinkman_navier_stokes.TransientBrinkmanNavierStokes method) (flatiron_tk.physics.transient_navier_stokes.TransientNavierStokes method) (flatiron_tk.physics.transient_scalar_transport.TransientScalarTransport method) (flatiron_tk.physics.TransientScalarTransport method)

add_to_weak_form() (flatiron_tk.physics.physics_problem.PhysicsProblem method)

B

BlockNonLinearSolver (class in flatiron_tk.solver.block_solver) BlockSplitNode (class in flatiron_tk.solver.block_solver) BlockSplitTree (class in flatiron_tk.solver.block_solver) Boundary (class in flatiron_tk.mesh.mesh) bp_get_time_steps() (in module flatiron_tk.io.bp_mod) bp_read_function() (in module flatiron_tk.io.bp_mod) bp_to_pvd() (in module flatiron_tk.io.bp_mod) bp_to_xdmf() (in module flatiron_tk.io.bp_mod) build_block_split_pc() (flatiron_tk.solver.block_solver.BlockSplitTree method) build_dirichlet_bc() (in module flatiron_tk.fem.boundary_conditions)

build_field_scalar_function() (in module flatiron_tk.functions.indicator_fields) build_function_space() (flatiron_tk.physics.multiphysics_problem.TransientMultiPhysicsProblem method) (flatiron_tk.physics.physics_problem.PhysicsProblem method) (flatiron_tk.physics.steady_scalar_transport.SteadyScalarTransport method) (flatiron_tk.physics.steady_stokes.SteadyStokes method) (flatiron_tk.physics.transient_brinkman_navier_stokes.TransientBrinkmanNavierStokes method) (flatiron_tk.physics.transient_navier_stokes.TransientNavierStokes method) (flatiron_tk.physics.transient_scalar_transport.TransientScalarTransport method) (flatiron_tk.physics.TransientScalarTransport method) build_rank_indicator_function() (in module flatiron_tk.functions.indicator_fields)

C

compute_flowrate() (in module flatiron_tk.functions.utils) constant() (in module flatiron_tk.functions.utils) Continuity (class in flatiron_tk.physics.steady_stokes)

convergence_history() (flatiron_tk.solver.convergence_monitor.ConvergenceMonitor method) ConvergenceMonitor (class in flatiron_tk.solver.convergence_monitor) CuboidMesh (class in flatiron_tk.mesh.basic_mesh) custom_warning_message() (in module flatiron_tk.info.info_messages)

D

debug_print() (in module flatiron_tk.info.info_messages) default_set_ksp() (flatiron_tk.solver.non_linear_solver.NonLinearSolver method) default_set_ksp0() (flatiron_tk.solver.block_solver.BlockNonLinearSolver method) default_set_ksp1() (flatiron_tk.solver.block_solver.BlockNonLinearSolver method)

dirichlet_bcs (flatiron_tk.physics.physics_problem.PhysicsProblem attribute) dS (flatiron_tk.physics.physics_problem.PhysicsProblem attribute) ds (flatiron_tk.physics.physics_problem.PhysicsProblem attribute) dx (flatiron_tk.physics.physics_problem.PhysicsProblem attribute)

E

evaluate_point() (flatiron_tk.functions.utils.PointEvaluator method) evaluate_set() (flatiron_tk.functions.utils.PointEvaluator method)

external_function() (flatiron_tk.physics.physics_problem.PhysicsProblem method) external_function_dict (flatiron_tk.physics.physics_problem.PhysicsProblem attribute)

F

flatiron_tk.fem.boundary_conditions module flatiron_tk.functions.indicator_fields module flatiron_tk.functions.utils module flatiron_tk.info.info_messages module flatiron_tk.io.bp_mod module flatiron_tk.io.io module flatiron_tk.mesh.basic_mesh module flatiron_tk.mesh.mesh module flatiron_tk.physics.multiphysics_problem module flatiron_tk.physics.particle_tracking module flatiron_tk.physics.physics_problem module flatiron_tk.physics.steady_navier_stokes module

flatiron_tk.physics.steady_scalar_transport module flatiron_tk.physics.steady_stokes module flatiron_tk.physics.transient_brinkman_navier_stokes module flatiron_tk.physics.transient_navier_stokes module flatiron_tk.physics.transient_scalar_transport module flatiron_tk.solver.block_solver module flatiron_tk.solver.convergence_monitor module flatiron_tk.solver.non_linear_problem module flatiron_tk.solver.non_linear_solver module flux() (flatiron_tk.physics.multiphysics_problem.MultiphysicsProblem method) (flatiron_tk.physics.physics_problem.PhysicsProblem method) (flatiron_tk.physics.steady_scalar_transport.SteadyScalarTransport method) (flatiron_tk.physics.steady_stokes.Continuity method) (flatiron_tk.physics.steady_stokes.Momentum method) (flatiron_tk.physics.steady_stokes.SteadyStokes method)

G

get_advection_velocity() (flatiron_tk.physics.steady_scalar_transport.SteadyScalarTransport method) get_block_split_index_set() (flatiron_tk.solver.block_solver.BlockSplitTree method) get_boundary_area() (flatiron_tk.mesh.mesh.Mesh method) get_boundary_centroid() (flatiron_tk.mesh.mesh.Mesh method) get_cell_diameter() (flatiron_tk.mesh.mesh.Mesh method) get_coordinates_on_boundary() (flatiron_tk.physics.particle_tracking.MasslessTracerTracker method) get_diffusivity() (flatiron_tk.physics.steady_scalar_transport.SteadyScalarTransport method) get_edge_stab() (flatiron_tk.physics.steady_scalar_transport.SteadyScalarTransport method) get_facet_normal() (flatiron_tk.mesh.mesh.Mesh method) get_fdim() (flatiron_tk.mesh.mesh.Mesh method) get_field_tags() (flatiron_tk.solver.block_solver.BlockSplitNode method) get_function_space() (flatiron_tk.physics.multiphysics_problem.MultiphysicsProblem method) (flatiron_tk.physics.physics_problem.PhysicsProblem method) get_function_space_search() (in module flatiron_tk.fem.boundary_conditions) get_gdim() (flatiron_tk.mesh.mesh.Mesh method) get_global_dofs() (flatiron_tk.physics.multiphysics_problem.MultiphysicsProblem method) get_kinematic_viscosity() (flatiron_tk.physics.steady_stokes.SteadyStokes method) get_ksp() (flatiron_tk.solver.block_solver.BlockSplitNode method) get_mean_boundary_normal() (flatiron_tk.mesh.mesh.Mesh method) get_mean_cell_diameter() (flatiron_tk.mesh.mesh.Mesh method) get_node_tag() (flatiron_tk.solver.block_solver.BlockSplitNode method) get_num_facets_local() (flatiron_tk.mesh.mesh.Mesh method)

get_physics() (flatiron_tk.physics.multiphysics_problem.MultiphysicsProblem method) get_physics_id() (flatiron_tk.physics.multiphysics_problem.MultiphysicsProblem method) get_reaction() (flatiron_tk.physics.steady_scalar_transport.SteadyScalarTransport method) get_residual() (flatiron_tk.physics.multiphysics_problem.MultiphysicsProblem method) (flatiron_tk.physics.physics_problem.PhysicsProblem method) (flatiron_tk.physics.steady_navier_stokes.SteadyNavierStokes method) (flatiron_tk.physics.steady_scalar_transport.SteadyScalarTransport method) (flatiron_tk.physics.steady_stokes.Continuity method) (flatiron_tk.physics.steady_stokes.Momentum method) (flatiron_tk.physics.transient_brinkman_navier_stokes.TransientBrinkmanNavierStokes method) (flatiron_tk.physics.transient_navier_stokes.TransientNavierStokes method) (flatiron_tk.physics.transient_scalar_transport.TransientScalarTransport method) (flatiron_tk.physics.TransientScalarTransport method) get_solution_function() (flatiron_tk.physics.multiphysics_problem.MultiphysicsProblem method) (flatiron_tk.physics.physics_problem.PhysicsProblem method) get_stab_constant() (flatiron_tk.physics.steady_navier_stokes.SteadyNavierStokes method) get_stabilization_constant() (flatiron_tk.physics.steady_stokes.SteadyStokes method) get_tdim() (flatiron_tk.mesh.mesh.Mesh method) get_test_function() (flatiron_tk.physics.multiphysics_problem.MultiphysicsProblem method) (flatiron_tk.physics.physics_problem.PhysicsProblem method) get_trial_function() (flatiron_tk.physics.multiphysics_problem.MultiphysicsProblem method) (flatiron_tk.physics.physics_problem.PhysicsProblem method) get_weak_form() (flatiron_tk.physics.physics_problem.PhysicsProblem method)

I

init_ksp() (flatiron_tk.solver.block_solver.BlockNonLinearSolver method) (flatiron_tk.solver.non_linear_solver.NonLinearSolver method) inject_particles() (flatiron_tk.physics.particle_tracking.MasslessTracerTracker method)

inject_particles_from_boundary() (flatiron_tk.physics.particle_tracking.MasslessTracerTracker method) insert_node() (flatiron_tk.solver.block_solver.BlockSplitNode method) is_root() (flatiron_tk.solver.block_solver.BlockSplitNode method) is_subspace() (in module flatiron_tk.fem.boundary_conditions)

J

jacobian() (flatiron_tk.physics.physics_problem.PhysicsProblem method)

L

LineMesh (class in flatiron_tk.mesh.basic_mesh)

M

mark_boundary() (flatiron_tk.mesh.mesh.Mesh method) mark_subdomain() (flatiron_tk.mesh.mesh.Mesh method) MasslessTracerTracker (class in flatiron_tk.physics.particle_tracking) Mesh (class in flatiron_tk.mesh.mesh) mesh (flatiron_tk.physics.physics_problem.PhysicsProblem attribute) module flatiron_tk.fem.boundary_conditions flatiron_tk.functions.indicator_fields flatiron_tk.functions.utils flatiron_tk.info.info_messages flatiron_tk.io.bp_mod flatiron_tk.io.io flatiron_tk.mesh.basic_mesh flatiron_tk.mesh.mesh flatiron_tk.physics.multiphysics_problem flatiron_tk.physics.particle_tracking flatiron_tk.physics.physics_problem flatiron_tk.physics.steady_navier_stokes flatiron_tk.physics.steady_scalar_transport flatiron_tk.physics.steady_stokes flatiron_tk.physics.transient_brinkman_navier_stokes flatiron_tk.physics.transient_navier_stokes flatiron_tk.physics.transient_scalar_transport flatiron_tk.solver.block_solver flatiron_tk.solver.convergence_monitor flatiron_tk.solver.non_linear_problem flatiron_tk.solver.non_linear_solver

Momentum (class in flatiron_tk.physics.steady_stokes) MultiphysicsProblem (class in flatiron_tk.physics.multiphysics_problem)

N

NonLinearProblem (class in flatiron_tk.solver.non_linear_problem)

NonLinearSolver (class in flatiron_tk.solver.non_linear_solver) number_of_steps_written (flatiron_tk.physics.physics_problem.PhysicsProblem attribute)

O

OnPoint (class in flatiron_tk.physics.steady_stokes)

P

PhysicsProblem (class in flatiron_tk.physics.physics_problem)

PointEvaluator (class in flatiron_tk.functions.utils) PVDWriter (class in flatiron_tk.io.io)

Q

q_degree (flatiron_tk.physics.physics_problem.PhysicsProblem attribute)

R

read_mesh() (in module flatiron_tk.io.io)

RectMesh (class in flatiron_tk.mesh.basic_mesh) reset_convergence_history() (flatiron_tk.solver.convergence_monitor.ConvergenceMonitor method)

S

set_advection_velocity() (flatiron_tk.physics.steady_scalar_transport.SteadyScalarTransport method) (flatiron_tk.physics.transient_scalar_transport.TransientScalarTransport method) (flatiron_tk.physics.TransientScalarTransport method) set_as_root() (flatiron_tk.solver.block_solver.BlockSplitNode method) set_bcs() (flatiron_tk.physics.multiphysics_problem.MultiphysicsProblem method) (flatiron_tk.physics.physics_problem.PhysicsProblem method) (flatiron_tk.physics.steady_stokes.SteadyStokes method) set_body_force() (flatiron_tk.physics.steady_stokes.SteadyStokes method) set_child_node_ksps() (flatiron_tk.solver.block_solver.BlockSplitTree method) set_density() (flatiron_tk.physics.steady_navier_stokes.SteadyNavierStokes method) set_diffusivity() (flatiron_tk.physics.steady_scalar_transport.SteadyScalarTransport method) (flatiron_tk.physics.transient_scalar_transport.TransientScalarTransport method) (flatiron_tk.physics.TransientScalarTransport method) set_dynamic_viscosity() (flatiron_tk.physics.steady_navier_stokes.SteadyNavierStokes method) set_element() (flatiron_tk.physics.multiphysics_problem.MultiphysicsProblem method) (flatiron_tk.physics.physics_problem.PhysicsProblem method) (flatiron_tk.physics.steady_stokes.SteadyStokes method) set_external_function() (flatiron_tk.physics.physics_problem.PhysicsProblem method) set_field_tags() (flatiron_tk.solver.block_solver.BlockSplitNode method) set_function_space() (flatiron_tk.physics.multiphysics_problem.MultiphysicsProblem method) (flatiron_tk.physics.physics_problem.PhysicsProblem method) set_indicator_function() (flatiron_tk.physics.transient_brinkman_navier_stokes.TransientBrinkmanNavierStokes method) set_initial_condition() (flatiron_tk.physics.transient_scalar_transport.TransientScalarTransport method) (flatiron_tk.physics.TransientScalarTransport method) set_initial_conditions() (flatiron_tk.physics.transient_brinkman_navier_stokes.TransientBrinkmanNavierStokes method) (flatiron_tk.physics.transient_navier_stokes.TransientNavierStokes method) set_initial_guess() (flatiron_tk.physics.steady_navier_stokes.SteadyNavierStokes method) set_IS() (flatiron_tk.solver.block_solver.BlockSplitNode method) set_kinematic_viscosity() (flatiron_tk.physics.steady_stokes.SteadyStokes method) set_ksp() (flatiron_tk.solver.block_solver.BlockSplitNode method) set_ksp_option() (flatiron_tk.solver.non_linear_solver.NonLinearSolver method) set_midpoint_theta() (flatiron_tk.physics.transient_brinkman_navier_stokes.TransientBrinkmanNavierStokes method) (flatiron_tk.physics.transient_navier_stokes.TransientNavierStokes method) (flatiron_tk.physics.transient_scalar_transport.TransientScalarTransport method) (flatiron_tk.physics.TransientScalarTransport method) set_new_attributes() (flatiron_tk.mesh.mesh.Boundary method) set_particle_positions() (flatiron_tk.physics.particle_tracking.MasslessTracerTracker method) set_particle_positions_from_boundary() (flatiron_tk.physics.particle_tracking.MasslessTracerTracker method)

set_permeability() (flatiron_tk.physics.transient_brinkman_navier_stokes.TransientBrinkmanNavierStokes method) set_quadrature_degree() (flatiron_tk.physics.physics_problem.PhysicsProblem method) set_reaction() (flatiron_tk.physics.steady_scalar_transport.SteadyScalarTransport method) (flatiron_tk.physics.transient_scalar_transport.TransientScalarTransport method) (flatiron_tk.physics.TransientScalarTransport method) set_root_function_space() (flatiron_tk.solver.block_solver.BlockSplitNode method) set_solution_function() (flatiron_tk.physics.multiphysics_problem.MultiphysicsProblem method) (flatiron_tk.physics.physics_problem.PhysicsProblem method) set_tag() (flatiron_tk.physics.physics_problem.PhysicsProblem method) set_test_function() (flatiron_tk.physics.multiphysics_problem.MultiphysicsProblem method) (flatiron_tk.physics.physics_problem.PhysicsProblem method) set_time_step_size() (flatiron_tk.physics.transient_brinkman_navier_stokes.TransientBrinkmanNavierStokes method) (flatiron_tk.physics.transient_navier_stokes.TransientNavierStokes method) (flatiron_tk.physics.transient_scalar_transport.TransientScalarTransport method) (flatiron_tk.physics.TransientScalarTransport method) set_trial_function() (flatiron_tk.physics.multiphysics_problem.MultiphysicsProblem method) (flatiron_tk.physics.physics_problem.PhysicsProblem method) set_weak_form() (flatiron_tk.physics.multiphysics_problem.MultiphysicsProblem method) (flatiron_tk.physics.physics_problem.PhysicsProblem method) (flatiron_tk.physics.steady_navier_stokes.SteadyNavierStokes method) (flatiron_tk.physics.steady_scalar_transport.SteadyScalarTransport method) (flatiron_tk.physics.steady_stokes.Continuity method) (flatiron_tk.physics.steady_stokes.Momentum method) (flatiron_tk.physics.steady_stokes.SteadyStokes method) (flatiron_tk.physics.transient_brinkman_navier_stokes.TransientBrinkmanNavierStokes method) (flatiron_tk.physics.transient_navier_stokes.TransientNavierStokes method) (flatiron_tk.physics.transient_scalar_transport.TransientScalarTransport method) (flatiron_tk.physics.TransientScalarTransport method) set_writer() (flatiron_tk.physics.multiphysics_problem.MultiphysicsProblem method) (flatiron_tk.physics.particle_tracking.MasslessTracerTracker method) (flatiron_tk.physics.physics_problem.PhysicsProblem method) solve() (flatiron_tk.solver.non_linear_solver.NonLinearSolver method) split_IS() (flatiron_tk.solver.block_solver.BlockSplitTree method) stabilization_constant() (flatiron_tk.physics.steady_scalar_transport.SteadyScalarTransport method) (flatiron_tk.physics.transient_scalar_transport.TransientScalarTransport method) (flatiron_tk.physics.TransientScalarTransport method) SteadyNavierStokes (class in flatiron_tk.physics.steady_navier_stokes) SteadyScalarTransport (class in flatiron_tk.physics.steady_scalar_transport) SteadyStokes (class in flatiron_tk.physics.steady_stokes)

T

tag (flatiron_tk.physics.physics_problem.PhysicsProblem attribute) to_dolfinx() (flatiron_tk.physics.physics_problem.PhysicsProblem method) TransientBrinkmanNavierStokes (class in flatiron_tk.physics.transient_brinkman_navier_stokes)

TransientMultiPhysicsProblem (class in flatiron_tk.physics.multiphysics_problem) TransientNavierStokes (class in flatiron_tk.physics.transient_navier_stokes) TransientScalarTransport (class in flatiron_tk.physics) (class in flatiron_tk.physics.transient_scalar_transport)

U

update_particle_positions() (flatiron_tk.physics.particle_tracking.MasslessTracerTracker method) update_previous_solution() (flatiron_tk.physics.multiphysics_problem.TransientMultiPhysicsProblem method) (flatiron_tk.physics.transient_brinkman_navier_stokes.TransientBrinkmanNavierStokes method) (flatiron_tk.physics.transient_navier_stokes.TransientNavierStokes method) (flatiron_tk.physics.transient_scalar_transport.TransientScalarTransport method) (flatiron_tk.physics.TransientScalarTransport method)

W

write() (flatiron_tk.io.io.PVDWriter method) (flatiron_tk.physics.multiphysics_problem.MultiphysicsProblem method) (flatiron_tk.physics.particle_tracking.MasslessTracerTracker method) (flatiron_tk.physics.physics_problem.PhysicsProblem method)

write_subphysics() (flatiron_tk.physics.multiphysics_problem.MultiphysicsProblem method)